Program

Friday, April 25, 2025


08:30 - 09:30

Registration

09:30 - 09:35

Opening
Hoon Cho, Shalmali Joshi

09:35 - 10:25

Training AI by Medical Data & Using AI on Medical Data: Privacy and Data-Quality



Recent AI research and development is mostly data-driven science, which is based on an increasingly more circular relationship between models and data; good data lets us train good models, and good models let us construct good data. This relationship is also true in medical AI, which has two (among many) added challenges specific to the medical domain: privacy and data quality. In this talk, I will first talk about training a clinical-domain LLM with synthetic clinical text so as to minimize privacy risk. Next, I will talk about how to use LLMs to evaluate medical data, specifically structured data and unstructured text, to detect potential inconsistencies between the two modalities.

10:25 - 10:40

Coffee Break

10:40 - 11:00

SQUiD: ultra-secure storage and analysis of genetic data for the advancement of precision medicine
Jacob Blindenbach*, Jiayi Kang, Seungwan Hong, Caline Karam, Thomas Lehner and Gamze Gürsoy

11:00 - 11:20

Secure and scalable gene expression quantification with pQuant
Seungwan Hong*, Conor Walker, Yoolim Choi and Gamze Gursoy

11:20 - 11:40

Beacon Reconstruction Attack: Reconstruction of genomes in genomic data-sharing beacons using summary statistics
Kousar Saleem, A. Ercument Cicek* and Sinem Sav

11:40 - 12:00

A Reinforcement Learning-based Approach for Dynamic Privacy Protection in Genomic Data Sharing Beacons
Masoud Poorghaffar Aghdam*, Sobhan Shukueian Tabrizi, Kerem Ayöz, Erman Ayday, Sinem Sav and A. Ercument Cicek

12:00 - 1:30

Lunch break

1:30 - 2:20

Homomorphic Encryption for Protecting Genomic Privacy



Homomorphic encryption is an encryption method to enable arbitrary computation on encrypted data without decryption. It has emerged as one of the promising solutions to address privacy issues in computation over sensitive data. In this talk, I will introduce the basic construction of homomorphic encryption. We then focus on the recent development of homomorphic encryption. I will conclude with the state-of-art benchmarks of privacy preserving genomic analysis.

2:20 - 2:40

Secure and Federated Quantitative Trait Loci Mapping with privateQTL
Yoolim A. Choi*, Yebin Kim, Peihan Miao, Tuuli Lappalainen and Gamze Gürsoy

2:40 - 3:00

Multi-Center EVSS: Patient-Centric Privacy-Preserving Encrypted Vector Similarity Search with HE and PIR
Garam Lee*, Suyeong Park and Sulgi Kim

3:00 - 3:20

Shechi: A Secure Distributed Computation Compiler Based on Multiparty Homomorphic Encryption
Haris Smajlović, David Froelicher, Ariya Shajii, Bonnie Berger, Hyunghoon Cho and Ibrahim Numanagić*

3:20 - 3:35

Closing


* Presenter